Vertebrate Life 10e Chapter 02 References

All of the sources that the authors consulted in preparing this chapter, as well as many of the sources from previous editions.

Bassham S, Postlethwait JH. 2005. The evolutionary development of placodes: a molecular genetic investigation of the larvacean urochordate Oikopleura dioica. Development 132:4259-4272. http://dev.biologists.org/content/132/19/4259

Collin SP. 2009. Early evolution of vertebrate photoreception: lessons from lampreys and lungfishes. Integrative Zoology 4:87-98. 10.1111/j.1749-4877.2008.00138.x

Cong P-Y, Hou X-G, Aldridge RJ, Purnell MA, Li Y-Z. 2015. New data on the palaeobiology of the enigmatic yunnanozoans from the Chengjiang Biota, Lower Cambrian, China. Palaeontology 58:45-70. 10.1111/pala.12117

Conway-Morris S, Caron J-B. 2012. Pikaia gracilens Walcott, a stem-group chordate from theh Middle Cambrian of British Columbia. Biological Reviews 87:48-512. 10.1111/j.1469-185X.2012.00220.x

Diogo R, Ziermann JM. 2015. Development, metamorphosis, morphology, and diversity: the evolution of chordate muscles and the origin of vertebrates. Developmental Dynamics 244:1046-1057. 10.1002/dvdy.24245

Diogo R and 7 others. 2015. A new heart for a new head in vertebrate cardiopharyngeal evolution. Nature 520:466-473. 10.1038/nature14435

Donoghue PCJ, Purnell MA. 2009. The evolutionary emergence of vertebrates from among their spineless relatives. Evolution Education and Outreach 2:204-212.

Donoghue PCJ, Rücklin M. 2016. The ins and outs of the evolutionary origin of teeth. Evolution & Development 18:19-30. 10.1111/ede.12099

dos Reis M and 5 others. 2015. Uncertainty in the timing of origin of animals and the limits of precision in molecular timescales. Current Biology 25:2939-2950. http://www.sciencedirect.com/science/article/pii/S096098221501177X

Dunn CW, Giribet G, Edgecombe GD, Hejnol A. 2014. Animal phylogeny and its evolutionary implications. Annual Review of Ecology, Evolution and Systematics 45:371-395. 10.1146/annurev-ecolsys-120213-091627

Garcia-Fernandez J, Benito-Gutierrez E. 2009. It’s a long way from amphioxus: Descendants of the earliest chordate. BioEssays 31:665-675. 10.1002/bies.200800110

Gee H. 2016. A home for Xenoturbella. Nature 530:43.

Gillis JA, Donoghue PCJ. 2007. The homology and phylogeny of chondrichthyan tooth enameloid. Journal of Morphology 268:33-49. 10.1002/bies.200800110

Gillis JA, Fritzenwanker JH, Lowe CJ. 2011. A stem-deuterostome origin of the vertebrate pharyngeal transcriptional network. Proceedings of the Royal Society B 279:237-346. http://rspb.royalsocietypublishing.org/content/279/1727/237

Graham A, Richardson J. 2012. Development and evolution of the pharyngeal apparatus. EvoDevo 2012 3:24. 10.1002/wdev.147 

Graham A, Shimeld SM. 2013. The origin and evolution of the ectodermal placodes. Journal of Anatomy 222:32-40. 10.1111/j.1469-7580.2012.01506.x

Graham A, Okabe M, Quinlan R. 2005. The role of the endoderm in the development and evolution of the pharyngeal arches. Journal of Anatomy 207:479-487. https://doi.org/10.1111/j.1469-7580.2005.00472.x

Green SA, Simoes-Costa M, Bronner ME. 2015. Evolution of vertebrates as viewed from the crest. Nature 250:474-482. doi:10.1038/nature14436

Grevellec A, Tucker AS. 2010. The pharyngeal pouches and clefts: Development, evolution, structure and derivatives. Seminars in Cell & Developmental Biology 21:325-332. https://doi.org/10.1016/j.semcdb.2010.01.022

Guo P and 6 others. 2009. Dual nature of the adaptive immune system in lampreys. Nature 459:796-801. doi: 10.1038/nature08068 

Hall BK, Gillis JA. 2013. Incremental evolution of the neural crest, neural crest cells, and neural crest-derived skeletal tissues. Journal of Anatomy 222:19-31. https://doi.org/10.1111/j.1469-7580.2012.01495.x

Heimberg A, McGlinn E. 2012. Building a robust A-P axis. Current Genomics 13:278-288. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3394115/ 

Hejnol A, Lowe CJ. 2014. Animal evolution: stiff or squishy notochord origins? Current Biology 24:R1131-R1133. https://doi.org/10.1016/j.cub.2014.10.059 

Henjol A and 16 others. 2009. Assessing the root of bilaterian animals with scalable phylogenomic methods. Proceedings of Royal Society B 276:4261-4270. DOI: 10.1098/rspb.2009.0896 

Hirasawa T, Kuratani S. 2016. Evolution of the vertebrate skeleton: morphology, embryology, and development. Zoological Letters (2015)1:2. https://doi.org/10.1186/s40851-014-0007-7

Holland LZ. 2013. Evolution of new characters after whole genome duplications: insights from amphioxus. Seminars in Cell and Developmental Biology 24:101-109. https://doi.org/10.1016/j.semcdb.2012.12.007 

Holland LZ. 2015. The origin and evolution of chordate nervous systems. Philosophical Transactions of the Royal Society B: 370:20150048. doi:org/10.1098/rstb.2015.0048.

Holland LZ. 2016. Tunicates. Current Biology 26:R146-156. http://www.sciencedirect.com/science/article/pii/S0960982215015213 

Holland ND, Holland LZ, Holland PWH. 2015. Scenarios for the making of vertebrates. Nature 520: 450-455. doi:10.1038/nature14433 

Huysseune A, Sire J-Y, Witten PE. 2009. Evolutionary and developmental origins of the vertebrate dentition. Journal of Anatomy 214:465-476. https://doi.org/10.1111/j.1469-7580.2009.01053.x 

Janvier P. 2011. Comparative anatomy: All vertebrates do have vertebrae. Current Biology 21:R661-R663. https://doi.org/10.1016/j.cub.2011.07.014

Janvier P. 2015. Facts and fancies about early fossil chordates and vertebrates. Nature 250:483-489. doi:10.1038/nature14437 

Kadota M and 6 others. 2017. CTCF bonding landscape in jawless fish with reference to Hox cluster evolution. Scientific Reports 7:4957. http://www.nature.com/articles/s41598-017-04506-x 

Kashara M. 2007. The 2R hypothesis: an update. Current Opinion in Immunology 19:547-552. http://www.sciencedirect.com/science/article/pii/S0952791507001239 

Lamb TD, Pugh EN Jr., Collin SP. 2008. The origin of the vertebrate eye. Evolution Education and Outreach 1:415-426. 10.1007/s12052-008-0091-2 

Lowe CJ, Clarke DN, Medeiros DM, Rokhsar DS, Gerhart J. 2015. The deuterostome context of chordate origins. Nature 520:456-465. doi:10.1038/nature14434

Margoliash D, Hale ME. 2008. Vertebrate vocalizations. Science 321:347-348.

Meulemans D, Bronner-Fraser M. 2007. Insights from amphioxus into the evolution of vertebrate cartilage. PLoS One 2(8): e787. doi:10.1371/journal.pone.0000787.

Nielsen C. 2015. Evolution of deuterostomy – and origin of the chordates. Biological Reviews doi:10.1111/brv.12229.

Nishida H. 2008, Development of the appendicularian Oikopleura dioica: Culture, genome, and cell lineages. Development, Growth & Differentiation 50:S239-S256. http://onlinelibrary.wiley.com/doi/10.1111/j.1440-169X.2008.01035.x/abstract 

Pérez-Pomares JM, González-Rosa JM, Muñoz-Chápuli R. 2009. Building the vertebrate heart – an evolutionary approach to cardiac development. International Journal of Developmental Biology 53:1427-1443. doi: 10.1387/ijdb.072409jp 

Peterson KJ, Eernisee DJ. 2016. The phylogeny, evolutionary developmental biology, and paleobiology of the Deuterostomia: 25 years of new techniques, new discoveries, and new ideas. Organisms, Diversity and Evolution 16:401-418. 10.1007/s13127-016-0270-x 

Qu Q, Haitina T, Zhu M, Ahlberg PE. 2015. New genomic and fossil data illuminate the origin of enamel. Nature 526:108-111. doi:10.1038/nature15259

Ravi V, Lam K, Boon-Hull AT, Brenner S, Venkatesh B. 2009. Elephant shark (Callorhunchus milii) provides insights into the evolution of Hox gene clusters in gnathostomes. Proceedings of the National Academy of Sciences, USA. 106: 16327-16332. http://www.pnas.org/content/106/38/16327 

Rychel AL, Smith SE, Shimamoto HT, Swalla BJ. 2006. Evolution and development of the chordates: collagen and pharyngeal cartilage. Molecular Biology and Evolution 23:541-549. https://doi.org/10.1093/molbev/msj055

Satoh N, Rokhsar D, Nishikawa T. 2012. Chordate evolution and the three-phylum system. Proceedings of the Royal Society B:20141729. DOI: 10.1098/rspb.2014.1729 

Satoh N. 2016. Chordate Origins and Evolution: the Molecular Evolutionary Road to Vertebrates. Elsevier, New York, NY.

Simakov O and 60 others. 2015. Hemichordate genomes and deuterostome origins. Nature 527:459-467. doi:10.1038/nature16150

Simakov O, Kawashima T. 2017. Independent evolution of genomic characters during major metazoan transitions. Developmental Biology 427:179-192. https://doi.org/10.1016/j.ydbio.2016.11.012 

Shubin N. 2009. Your Inner Fish: A Journey into the Billion-Year History of the Human Body. Vintage Books, New York, NY.

Sire H-Y, Donoghue PCJ, Vickaryous MK. 2009. Origin and evolution of the integumentary skeleton in non-tetrapod vertebrates. Journal of Anatomy 214:409-440. https://doi-org.ezproxy.rit.edu/10.1111/j.1469-7580.2009.01046.x 

Soukup V, Epperlain H-H, Horacek I, Cerny F. 2008. Dual epithelial origin of vertebrate oral teeth. Nature 455:795-798. doi:10.1038/nature07304 

Sower SA, Freamat M, Kavanaugh SJ. 2009. The origins of the vertebrate hypothalamic-pituitary-gonadal (HPG) and hypothalamic-pituitary-thyroid (HPT) endocrine systems: New insights from lampreys. General and Comparative Endocrinology 161:20-29. https://doi.org/10.1016/j.ygcen.2008.11.023

Swalla BJ, Smith AB. 2008. Deciphering deuterostome phylogeny: molecular, morphological and paleontological perspectives. Philosophical Transactions of the Royal Society B. 363:1557-1568. DOI: 10.1098/rstb.2007.2246 

Venkatesh B and 32 others. 2014. Elephant shark genome provides unique insights into gnathostome evolution. Nature 505:174-179. doi:10.1038/nature12826 

Wagner GP, Amemiya C, Ruddle F. 2003. Hox cluster duplications and the opportunity for evolutionary novelties. Proceedings of the National Academy of Sciences, USA 100:14063-14606. https://doi.org/10.1073/pnas.2536656100 

Winchell CJ, Sullivan J, Cameron CB, Swalla BJ, Mallatt J. 2002. Evaluating hypotheses of deuterostome phylogeny and chordate evolution with new LSU and SSU ribosomal DNA data. Molecular Biology and Evolution 19:762-766. https://doi.org/10.1093/oxfordjournals.molbev.a004134 

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